FunctSNP is an R package for linking SNPs to functional knowledge. Functional knowledge is obtained from several online resources:
dbAutoMaker is used to generate the local DB files used by FunctSNP. For convenience, we maintain DB files for several species which can be installed from within FunctSNP:
Development Team
FunctSNP was developed by the systems genetics group of CSIRO Livestock Industries with input from the University of New England (UNE).
Primary Developers
- Mr Stephen J. Goodswen - UTS PhD candidate
- Dr Nathan S. Watson-Haigh - AWRI
Contributors
Maintainers
Citation Details
If you use FunctSNP, please acknowledge the work of its authors by using the following reference:
Goodswen, S.J. et al. (2010) FunctSNP: an R package to link SNPs to functional knowledge and dbAutoMaker: a suite of Perl scripts to build SNP databases. BMC Bioinformatics, 11:311. [DOI:10.1186/1471-2105-11-311]